I've been using Audio Hijack for years, but never looked into setting markers. I chop the recording into individual tracks with titles, then enclose them in a folder named after the album. Then import it all into iTunes to add info and artwork. Excellent application.
(Edit) Oops! Sorry. I record with Audio Hijack, but use Amadeus Pro to do the editing. Another excellent app.
Actually, you can split an AH recording into multiple
separate tracks, but only in real time, i.e. while you're sitting at your Mac listening.
I use Fission (by the same devs as AH [and with an available discount if you buy the set]) for editing, and I've always been happy with it (but I"ll qualify that by saying that I"m a rank amateur in terms of what I use it for).
