I hadn't known about the Safari update (and mine now reads at 9.1.1) but I hadn't known that iTunes was included. Of course, I neglected to click "more" when I went to App Store. Had I done that, they would have been revealed. That explains why my update took up more space than yours. (Emphasis added)
Which one of those"hadn'ts" should be a "had"?
My 10.11.5 didn't included the iTunes update which also d/l'ed automatically in the background and, surprisingly, was either four or five separate packages. I didn't even realize they added up to the update until I looked at my version number after I installed them.
(I'm not sure what you mean by "click more".)