Why are you logging in as root?
The general rule is that anything with a GUI is too complicated to be safely run as the superuser. (It's OK for something with a GUI to use a helper tool that is suid root. The key point is that the helper tool does one simple thing, and it's easier to verify that it has no vulnerabilities.) Something as complex as Finder should never run with superuser powers.
Heck, I don't trust Finder to manage permissions correctly, even in a normal account. Finder's Get Info box is scary crazy. I always go to Terminal manage permissions, because it at least has sane, predictable behavior.
Anything you need superuser powers for you can do with sudo.
Yeah, yeah. I know. Apple's online help tells novice users how to "enable root" so they can log in as root, but I cringe every time I see that. It's a really bad idea, even for an advanced user like your or me.